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master's thesis
Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj
Zagreb: University of Zagreb, Faculty of Agriculture, 2022. urn:nbn:hr:204:457764
Raić, Lucia
University of Zagreb
Faculty of Agriculture
Animal Science

Institutional repository: Repository Faculty of Agriculture University of Zagreb

Cite this document

Raić, L. (2022). Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj (Master's thesis). Zagreb: University of Zagreb, Faculty of Agriculture. Retrieved from https://urn.nsk.hr/urn:nbn:hr:204:457764

Raić, Lucia. "Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj." Master's thesis, University of Zagreb, Faculty of Agriculture, 2022. https://urn.nsk.hr/urn:nbn:hr:204:457764

Raić, Lucia. "Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj." Master's thesis, University of Zagreb, Faculty of Agriculture, 2022. https://urn.nsk.hr/urn:nbn:hr:204:457764

Raić, L. (2022). 'Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj', Master's thesis, University of Zagreb, Faculty of Agriculture, accessed 20 December 2024, https://urn.nsk.hr/urn:nbn:hr:204:457764

Raić L. Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj [Master's thesis]. Zagreb: University of Zagreb, Faculty of Agriculture; 2022 [cited 2024 December 20] Available at: https://urn.nsk.hr/urn:nbn:hr:204:457764

L. Raić, "Analiza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj", Master's thesis, University of Zagreb, Faculty of Agriculture, Zagreb, 2022. Available at: https://urn.nsk.hr/urn:nbn:hr:204:457764

Metadata
TitleAnaliza varijabilnosti mitogenoma zeca (Lepus europaeus) u Republici Hrvatskoj
Title (english)Analysis of mitogenome variability of the brown hare (Lepus europaeus) in Croatia
AuthorLucia Raić
MentorVladimir Brajković (mentor)
Committee memberVladimir Brajković (predsjednik povjerenstva)
Committee memberVlatka Čubrić Čurik (član povjerenstva)
Committee memberIno Čurik (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Agriculture
(Animal Science)
Zagreb
Defense date and country2022-09-29, Croatia
Scientific / art field,
discipline and subdiscipline		BIOTECHNICAL SCIENCES
Agronomy
Abstract
Dosadašnje filogenetske analize sugeriraju da su europski zečevi (Lepus europaeus) preživjeli pleistocenski glacijal u refugijima u Europi (Apeninski i Balkanski poluotok) te Maloj Aziji. Cilj je ovog istraživanja ustanoviti filogenetske odnose zečeva na području Europe i RH. Analiza se odvila na dva seta mitogenoma, s područja Europe te Hrvatske. Radi se o kvalitetnim uzorcima s prosječnom dubinom i duljinom pokrivenosti 662.91 i 99.99%. Otkrivena su 42 haplotipa u europskom setu (43 sekvence) te 28 u hrvatskom (29 sekvenci). Svaki sadrži po jednu sekvencu (iznimka je H13 koji sadrži dvije), što ukazuje na veliku raznolikost haplotipova. Potvrđeno je postojanje dvije velike grupe haplotipova: grupa A s područja Europe i grupa B iz Anatolije, udaljene 181 polimorfno mjesto. Hrvatski su haplotipovi (uključujući historijske) svrstani u grupu A, a dalje se grupiraju u grupe D (Južno primorje) i I (Sjeverno primorje) te se uočava djelomično grupiranje iz Središnje Hrvatske u grupu S. Iznosi genetskih udaljenosti te velik broj haplotipova ukazuju na veliku varijabilnost vrste.
Abstract (english)
Current phylogenetic analyzes suggest that European hares (Lepus europaeus) survived the Pleistocene glacial in refugia in Europe (Apennine and Balkan peninsulas) and Asia Minor. The goal of this research is to establish the phylogenetic relationships of brown hares in Europe and the Republic of Croatia. The analysis was based on two sets of mitogenomes, from Europe and Croatia. These are quality samples with an average depth and length of coverage of 662.91 and 99.99%. 42 haplotypes were discovered in the European set (43 sequences) and 28 in the Croatian set (29 sequences). Each contains one sequence (the exception is H13 which contains two), indicating a high diversity of haplotypes. The existence of two large groups of haplotypes was confirmed: group A from Europe and group B from Anatolia, separated by 181 polymorphic sites. Croatian haplotypes (including ancient ones) are classified into group A and are further grouped into groups D (Southern coast) and I (Northern coast), and a partial grouping from Central Croatia into group S is observed. The amounts of genetic distances and a large number of haplotypes indicate great variability of the species.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:204:457764
Study programmeTitle: Animal Genetics and Breeding
Study programme type: university
Study level: graduate
Academic / professional title: magistar/ magistra inženjer/inženjerka genetike i oplemenjivanja životinja (magistar/ magistra inženjer/inženjerka genetike i oplemenjivanja životinja)
Type of resourceText
File originBorn digital
Access conditionsAccess restricted to students and staff of home institution
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Created on2022-11-03 07:52:01