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undergraduate thesis
Popunjavanje rupa u djelomično sastavljenom genomu
Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing, 2022. urn:nbn:hr:168:203563
Oreč, Marija
University of Zagreb
Faculty of Electrical Engineering and Computing

Institutional repository: FER Repository

Cite this document

Oreč, M. (2022). Popunjavanje rupa u djelomično sastavljenom genomu (Undergraduate thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:203563

Oreč, Marija. "Popunjavanje rupa u djelomično sastavljenom genomu." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2022. https://urn.nsk.hr/urn:nbn:hr:168:203563

Oreč, Marija. "Popunjavanje rupa u djelomično sastavljenom genomu." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2022. https://urn.nsk.hr/urn:nbn:hr:168:203563

Oreč, M. (2022). 'Popunjavanje rupa u djelomično sastavljenom genomu', Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 07 November 2024, https://urn.nsk.hr/urn:nbn:hr:168:203563

Oreč M. Popunjavanje rupa u djelomično sastavljenom genomu [Undergraduate thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2022 [cited 2024 November 07] Available at: https://urn.nsk.hr/urn:nbn:hr:168:203563

M. Oreč, "Popunjavanje rupa u djelomično sastavljenom genomu", Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2022. Available at: https://urn.nsk.hr/urn:nbn:hr:168:203563

Metadata
TitlePopunjavanje rupa u djelomično sastavljenom genomu
Title (english)Gap Filling in a Partially Assembled Genome
AuthorMarija Oreč
MentorKrešimir Križanović (mentor)
Committee memberKrešimir Križanović (predsjednik povjerenstva)
Committee memberFilip Bosnić (član povjerenstva)
Committee memberJosip Marić (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2022-06-23, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
U današnje vrijeme, uređaji za postupak sekvenciranja ograničeni su na očitanje manjih dijelova s određenom pogreškom. Pošto ne sekvenciraju cijele genome, jedan od glavnih zadataka u bioinformatici jest sastavljanje cijelog genoma na temelju nastalih očitanja. Razvijeni alati za ovaj problem za velike genome sastavljaju manje dijelove koje nazivamo djelomično sastavljenim fragmentiranim genomima. Potrebno je razviti dodatne alate za poboljšanje takvih djelomično sastavljenih genoma. U ovom radu se sastavljeni genom pokušava dobiti korištenjem algoritma zvanog HERA. Ovaj pristup je temeljen na izgradnji grafa preklapanja te traženju adekvatne staze za konstruiranje cjelovite sekvence. Rezultati razvijenog alata prikazani su nad testnim primjerima.
Abstract (english)
Nowadays, sequencers are limited to reading smaller parts with a certain error. Since they do not sequence the entire genome, one of the main tasks in Bionfortmatics is to assemble whole genomes based on the resulting reads. Developed tools for this problem assemble smaller parts of large genomes that we call partially assembled fragmented genomes. Additional tools need to be developed to improve such partially fragmented genomes. In this paper, a complete genome is attempted to be obtained using an algorithm called HERA. This approach is based on the construction of an overlap graph and finding adequate paths for constructing complete sequences. The results of the developed tool are shown above the test examples.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:168:203563
Study programmeTitle: Computing
Study programme type: university
Study level: undergraduate
Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
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Created on2023-01-14 21:20:03