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undergraduate thesis
Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma
Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing, 2023. urn:nbn:hr:168:262334
Penić, Jana
University of Zagreb
Faculty of Electrical Engineering and Computing

Institutional repository: FER Repository

Cite this document

Penić, J. (2023). Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma (Undergraduate thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:262334

Penić, Jana. "Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2023. https://urn.nsk.hr/urn:nbn:hr:168:262334

Penić, Jana. "Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2023. https://urn.nsk.hr/urn:nbn:hr:168:262334

Penić, J. (2023). 'Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma', Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 28 December 2024, https://urn.nsk.hr/urn:nbn:hr:168:262334

Penić J. Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma [Undergraduate thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2023 [cited 2024 December 28] Available at: https://urn.nsk.hr/urn:nbn:hr:168:262334

J. Penić, "Hibridna metoda sažimanja skupa genoma korištenjem referentnog genoma", Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2023. Available at: https://urn.nsk.hr/urn:nbn:hr:168:262334

Metadata
TitleHibridna metoda sažimanja skupa genoma korištenjem referentnog genoma
Title (english)Hybrid referential genome compression
AuthorJana Penić
MentorMirjana Domazet-Lošo (mentor)
Committee memberMirjana Domazet-Lošo (predsjednik povjerenstva)
Committee memberMario Brčić (član povjerenstva)
Committee memberMihael Kovač (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2023-06-30, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
S padanjem cijene sekvenciranja genoma, taj je postupak postao sve češći te zbog toga količina genomskih podataka sve brže raste. To je dovelo do potrebe za učinkovitijim načinima za pohranu i prijenos genomskih podataka te razvojem specijaliziranih algoritama za sažimanje genomskih podataka. U ovom je završnom radu implementiran algoritam za sažimanje Hybrid Referential Compression Method korištenjem programskog jezika Python. HRCM koristi referentni genom za sažimanje drugih genoma traženjem podudaranja sljedova nukleotida. U radu je objašnjen postupak sažimanja i ekstrakcije podataka, korištene strukture podataka, utjecaj parametara na provođenje sažimanja te su prikazani rezultati testiranja na različitim skupovima podataka.
Abstract (english)
As the cost of genome sequencing has fallen, this procedure has become more common and, as a result, the amount of genomic data is rapidly growing. This has led to the need for more efficient ways to store and transfer genomic data and for the development of specialized algorithms for compressing genomic data. In this thesis, the compression algorithm Hybrid Referential Compression Method is implemented using the programming language Python. HRCM uses a reference genome to compress other genomes by searching for matches in the nucleotide sequences. The thesis explains the process of data compression and decompression, the used data structures, the influence of parameters on the implementation of compression, and presents the results of testing on different data sets.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:168:262334
Study programmeTitle: Computing
Study programme type: university
Study level: undergraduate
Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
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Created on2023-07-13 10:27:12