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undergraduate thesis
Praćenje stanica u mikroskopskim snimkama
Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing, 2018. urn:nbn:hr:168:957579
Razum, Domagoj
University of Zagreb
Faculty of Electrical Engineering and Computing

Institutional repository: FER Repository

Cite this document

Razum, D. (2018). Praćenje stanica u mikroskopskim snimkama (Undergraduate thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:957579

Razum, Domagoj. "Praćenje stanica u mikroskopskim snimkama." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2018. https://urn.nsk.hr/urn:nbn:hr:168:957579

Razum, Domagoj. "Praćenje stanica u mikroskopskim snimkama." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2018. https://urn.nsk.hr/urn:nbn:hr:168:957579

Razum, D. (2018). 'Praćenje stanica u mikroskopskim snimkama', Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 26 November 2024, https://urn.nsk.hr/urn:nbn:hr:168:957579

Razum D. Praćenje stanica u mikroskopskim snimkama [Undergraduate thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2018 [cited 2024 November 26] Available at: https://urn.nsk.hr/urn:nbn:hr:168:957579

D. Razum, "Praćenje stanica u mikroskopskim snimkama", Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2018. Available at: https://urn.nsk.hr/urn:nbn:hr:168:957579

Metadata
TitlePraćenje stanica u mikroskopskim snimkama
Title (english)Cell tracking in microscopic sequences
AuthorDomagoj Razum
MentorIgor Lacković (mentor)
Committee memberIgor Lacković (predsjednik povjerenstva)
Committee memberDominik Džaja (član povjerenstva)
Committee memberGoran Šeketa (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2018-07-13, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Electrical Engineering
Abstract
U ovom radu ukratko su objašnjene metode detekcije, klasifikacije i praćenja objekata u video snimkama. Rad se fokusira na praćenje i analizu oblika i kretanja stanica u mikroskopskim snimaka. Analizirani su neki od dostupnih programa (iTrack4U, TrackMate) za automatsko praćenje stanica, te su opisane njihove funkcionalnosti i statistički podatci koje mogu izračunati analizom kretnja stanica. Poboljšane su mogućnosti programa CellTracker i to tako da je implementiran algoritam za izračun površine stanice koja se prati i omogućeno je crtanje obrisa svih vidljivih stanica unutar slike. Korištene su javno dostupne mikroskopske snimke i video snimke in vitro kultura živčanih matičnih stanica. Prikazani su rezultati obrisa i izračunate površine stanica na slikama različitih složenosti. Opisani su i problemi koji se javljaju prilikom obrade ovakvih slika.
Abstract (english)
This thesis briefly explains object detection, classification and tracking methodologies in video sequences. The focus of the work is on cell tracking and, movement and shape analysis in microscopic sequences. Some of the available programs for automatic cell tracking have been analysed (iTrack4U, TrackMate), including their functionalities and statistical data that can be calculated based on cell movement analysis. Functionalities of CellTracker image processing software was improved by implementing an algorithm for calculating tracked cell surface area, as well as the drawing of cell contour of all visible cells in the image. Publicly available microscopy image sequences and in vitro culture of neural stem cells were used. As a result, cell contour and calculated cell surface area were shown on images of different complexity. Moreover, various difficulties during image processing were described.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:168:957579
Study programmeTitle: Electrical Engineering and Information Technology
Study programme type: university
Study level: undergraduate
Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka elektrotehnike i informacijske tehnologije (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka elektrotehnike i informacijske tehnologije)
Type of resourceText
File originBorn digital
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Created on2019-03-14 00:23:56