prikaz prve stranice dokumenta Regular higher order repeat structures in beetle Tribolium castaneum genome
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Scientific paper - Original scientific paper
Regular higher order repeat structures in beetle Tribolium castaneum genome
Genome Biology and Evolution, 9 (2016), 10; 2668-2680. https://doi.org/10.1093/gbe/evw174
Vlahović, Ines; Glunčić, Matko; Rosandić, Marija; Ugarković, Đurđica; Paar, Vladimir

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Vlahović, I., Glunčić, M., Rosandić, M., Ugarković, Đ. & Paar, V. (2016). Regular higher order repeat structures in beetle Tribolium castaneum genome. Genome Biology and Evolution, 9. (10), 2668-2680. doi: 10.1093/gbe/evw174

Vlahović, Ines, et al. "Regular higher order repeat structures in beetle Tribolium castaneum genome." Genome Biology and Evolution, vol. 9, no. 10, 2016, pp. 2668-2680. https://doi.org/10.1093/gbe/evw174

Vlahović, Ines, Matko Glunčić, Marija Rosandić, Đurđica Ugarković and Vladimir Paar. "Regular higher order repeat structures in beetle Tribolium castaneum genome." Genome Biology and Evolution 9, no. 10 (2016): 2668-2680. https://doi.org/10.1093/gbe/evw174

Vlahović, I., et al. (2016) 'Regular higher order repeat structures in beetle Tribolium castaneum genome', Genome Biology and Evolution, 9(10), pp. 2668-2680. doi: 10.1093/gbe/evw174

Vlahović I, Glunčić M, Rosandić M, Ugarković Đ, Paar V. Regular higher order repeat structures in beetle Tribolium castaneum genome. Genome Biology and Evolution [Internet]. 2016 [cited 2024 May 30];9(10):2668-2680. doi: 10.1093/gbe/evw174

I. Vlahović, M. Glunčić, M. Rosandić, Đ. Ugarković and V. Paar, "Regular higher order repeat structures in beetle Tribolium castaneum genome", Genome Biology and Evolution, vol. 9, no. 10, pp. 2668-2680, 2016. [Online]. Available at: https://urn.nsk.hr/urn:nbn:hr:217:107914. [Accessed: 30 May 2024]

Metadata
Title (english)Regular higher order repeat structures in beetle Tribolium castaneum genome
AuthorInes Vlahović
MBZ: 310164
AuthorMatko Glunčić
MBZ: 256133
AuthorMarija Rosandić
AuthorĐurđica Ugarković
MBZ: 3874
AuthorVladimir Paar
MBZ: 34485
Author's institutionUniversity of Zagreb
Faculty of Science
(Department of Physics)
Scientific / art field,
discipline and subdiscipline		NATURAL SCIENCES
Biology
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract (english)
Higher order repeats (HORs) containing tandems of primary and secondary repeat units (head-to- tail "tandem within tandem pattern"), referred to as regular HORs, are typical for primate alpha satellite DNAs and most pronounced in human genome. Regular HORs are known to be a result of recent evolutionary processes. In non-primate genomes mostly so called complex HORs have been found, without head to tail tandem of primary repeat units. In beetle Tribolium castaneum, considered as a model case for genome studies, large tandem repeats have been identified, but no HORs have been reported. Here, using our novel robust repeat finding algorithm Global Repeat Map (GRM), we discover two regular and six complex HORs in Tribolium castaneum. In organizational pattern, the integrity and homogeneity of regular HORs in Tribolium castaneum resemble human regular HORs (with Tribolium castaneum monomers different from human alpha satellite monomers), involving a wider range of monomer lengths than in human HORs. Similar regular higher order repeat structures have previously not been found in insects. Some of these novel HORs in Tribolium castaneum appear as most regular among known HORs in non-primate genomes, although with substantial riddling. This is intriguing, in particular from the point of view of role of noncoding repeats in modulation of gene expression.
Keywords (english)
Languageenglish
Publication typeScientific paper - Original scientific paper
Publication statusPublished
Peer reviewPeer review - international
Publication versionPublished version
Journal titleGenome Biology and Evolution
Numberingvol. 9, no. 10, pp. 2668-2680
p-ISSN1759-6653
DOIhttps://doi.org/10.1093/gbe/evw174
URN:NBNurn:nbn:hr:217:107914
Publication2016
Document URLhttps://academic.oup.com/gbe/article/9/10/2668/2669848
Type of resourceText
Access conditionsOpen access
Terms of useLicence Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) icon
Public note© The Author(s) 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. Accepted: 21 July 2016.
Created on2020-02-28 10:34:44