Title Design and testing of Adepantins - functional artificial antibiotics
Title (croatian) Dizajn i testiranje adepantina – novih peptidnih antibiotika
Author Nada Ilić
Mentor Davor Juretić (mentor)
Mentor Alessandro Tossi (komentor) strani drzavljanin: Nije dostupno
Committee member Jasna Puizina (predsjednik povjerenstva)
Committee member Bono Lučić (član povjerenstva)
Committee member Stjepan Orhanović (član povjerenstva)
Granter University of Split Faculty of Science (Department of Physics) Split
Defense date and country 2013-07-12, Croatia
Scientific / art field, discipline and subdiscipline NATURAL SCIENCES Chemistry
Universal decimal classification (UDC ) 577 - Biochemistry. Molecular biology. Biophysics
Abstract As an important part of the innate immune system of all organisms, antimicrobial peptides, are considered as a possible solution for fighting bacteria resistant to standard antibiotics.Crucial characteristic of peptide antibiotic, as drug candidate is its high selectivity, parameterized as the ratio of concentration causing 50% haemolysis (HC50) against erythrocytes and the minimal inhibitory concentration (MIC) against the reference bacterium Escherichia coli. Using the “Designer” algorithm adepantins were designed - highly selective artificial glycine and lysine rich peptides in predominant α helical conformation, having less than 50% homology of primary sequence to any known sequence of antimicrobial peptides. The algoritham used our database of anuran antimicrobial peptides with known selectivity index. Structure and activity of adepantins were experimentally and computationally tested in their monomeric, dimeric and fluorescently labelled form. Experimental investigations performed on different bacteria strains showed high selectivity of adepantins for Gram-negative bacteria ( MIC = 0.5 - 4 μM ), especially E. coli. In membrane permeabilization measurements, different membrane models were used and adepantins showed rapid permeabilization of both membranes of E. coli. These tests provided insight in their mode of action. All monomeric adepantins have exceptionally low haemolytic activity, while dimers expressed certain toxicity against host cells. It is proven that adepantins bind efficiently to the cell surface of the host cell membranes without subsequent membrane damage. Gathered results confirmed that adepantins are indeed highly selective artificial peptide antibiotics.
Abstract (croatian) Kao važan dio urođenog imunološkog sustava svih živih bića, antimikrobni peptidi, smatraju se možebitnim riješenjem u brobi protiv bakterija otpornih na standardne antibiotike. Važna osobina dobrog kandidata za budući lijek njegova je selektivnost, koja se određuje kao omjer koncentracije pri kojoj se opaža 50%-tna hemolitična aktivnost prema eritrocitima i minimalne inhibitorne koncentracije pri kojoj se opaža 100%-tna inhibicija rasta bakterije Escherichije coli. Algoritmom „Designer“ dizajnirani su adepantini–veoma selektivni umjetni peptid i u konformaciji α uzvojnice, bogati glicinom i lizinom, a sličnost njihovih sekvenci s poznatim antimikrobnim peptidima manja je od 50%. Algoritam je koristio našu bazu podataka antimikrobnih peptida iz anura s poznatim indeksom selektivnosti.
Eksperimentalnim i računalnim metodama istražene su strukture i aktivnosti monomera, dimera i fluorescentno označenih oblika adepantina. Eksperimentalna istraživanja provedena na različitim sojevima bakterija pokazala su visoku selektivnost adepantina prema Gram-negativnim bakterijama ( MIC = 0.5 - 4 μM ), naročito prema E. coli. U mjerenju propusnosti membrana rabljeni su različiti modeli membrana, a pokazalo se da adepantini vrlo brzo povećavaju propusnost obje membrane E. coli. Time je dobiven uvid u mehanizme djelovanja adepantina. Svi monomeri adepantina imaju izrazito malu hemolitičnost prema eritrocitima, dok su dimeri pokazali određenu toksičnost prema ljudskim stanicama. Dokazano je da se adepantini vežu na staničnu površinu ljudskih stanica bez popratnog oštećenja membrane. Prikupljeni rezultati potvrdili su adepantine kao jako selektivne umjetne peptidne antibiotike.
Keywords
antimicrobial peptides
computational design
selectivity index
adepantins
helical peptides
Escherichia coli
membrane permeabilization
low toxicity
anuran
Keywords (croatian)
antimikrobni peptidi
računalni dizajn
indeks selektivnosti
adepantini
peptidi u strukturi α uzvojnice
Escherichia coli
permeabilizacija membrane
niska toksičnost
anura
Language english
URN:NBN urn:nbn:hr:166:154296
Study programme Title: Postgraduate University Study of Biophysics Study programme type: university Study level: postgraduate Academic / professional title: doktor/doktorica znanosti, područje prirodnih znanosti, polje kemija (doktor/doktorica znanosti, područje prirodnih znanosti, polje kemija)
Type of resource Text
Extent 145 str. ; 30 cm
File origin Born digital
Access conditions Open access
Terms of use
Created on 2018-10-18 12:49:51