Native and protected breeds represent a valuable genetic heritage that has been created for hundreds of years and as such should be protected and preserved. Unlike selected breeds that have proven to be susceptible to disease and climaticr conditions, native breeds have the ability to adapt to everpresent climate change. Also they can serve as a basis for improving the features of existing breeds of domestic animals, can be used in the maintenance and use of pasture land, include in ecological production programs. They are an integral part of the ecosystem that depends on numerous other plant and animal species. By Croatian accession to the EU, Croatia become a beneficiary of funds from the European funds in the period 2014- 2020. And has available 2.383 billion euros for agriculture and rural development by the European Agricultural Fund for Rural Development (EAFRD). Through IACS rural development measures are traying to reduce or stop the negative impact of agriculture on natural resources and biodiversity to encourage farmers to protect the environment in their economy. When a farmer asks for support for this measure, he will have to spend it for the next five years. In this way , the achievement of the goasls of this measure is enable. In addition to farmers' support for this measure can be submitted by Breeding organizations, also participate in the conservation of indigenous and protected breeds of domestic animals. Actual costs of holding the native and protected breeds of domestic animals are higher than the income, and that the state suggests are the minimum that serves as a guarante that farmers will continue to breeding native and protected breeds of domestic animals.