prikaz prve stranice dokumenta Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije
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master's thesis
Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije
Zagreb: University of Zagreb, Faculty of Agriculture, 2020. urn:nbn:hr:204:884806
Jurić, Tea
University of Zagreb
Faculty of Agriculture
Animal Science

Institutional repository: Repository Faculty of Agriculture University of Zagreb

Cite this document

Jurić, T. (2020). Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije (Master's thesis). Zagreb: University of Zagreb, Faculty of Agriculture. Retrieved from https://urn.nsk.hr/urn:nbn:hr:204:884806

Jurić, Tea. "Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije." Master's thesis, University of Zagreb, Faculty of Agriculture, 2020. https://urn.nsk.hr/urn:nbn:hr:204:884806

Jurić, Tea. "Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije." Master's thesis, University of Zagreb, Faculty of Agriculture, 2020. https://urn.nsk.hr/urn:nbn:hr:204:884806

Jurić, T. (2020). 'Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije', Master's thesis, University of Zagreb, Faculty of Agriculture, accessed 20 December 2024, https://urn.nsk.hr/urn:nbn:hr:204:884806

Jurić T. Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije [Master's thesis]. Zagreb: University of Zagreb, Faculty of Agriculture; 2020 [cited 2024 December 20] Available at: https://urn.nsk.hr/urn:nbn:hr:204:884806

T. Jurić, "Procjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije", Master's thesis, University of Zagreb, Faculty of Agriculture, Zagreb, 2020. Available at: https://urn.nsk.hr/urn:nbn:hr:204:884806

Metadata
TitleProcjena i usporedba raznolikosti različitih populacija kokoši putem genomske informacije
Title (english)Estimation and comparation of the diversity of different chicken populations through genomic information
AuthorTea Jurić
MentorMaja Ferenčaković (mentor)
Committee memberMaja Ferenčaković (predsjednik povjerenstva)
Committee memberVlatka Čubrić Čurik (član povjerenstva)
Committee memberZlatko Janječić (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Agriculture
(Animal Science)
Zagreb
Defense date and country2020-09-30, Croatia
Scientific / art field,
discipline and subdiscipline		BIOTECHNICAL SCIENCES
Agronomy
Abstract
Kokoši i njihovi proizvodi čine važan udio u prehrani ljudi, a isto tako su pogodan organizam za istraživanje. Postoji velik broj pasmina kokoši koje su rasprostranjene po cijelom svijetu. Današnja tehnologija, SNP-ovi velike gustoće i dostupnost genomske informacije omogućuju lakša i točnija istraživanja genoma. U ovom radu procijenjeni su genetski parametri bitni za procjenu ugroženosti populacije, a to su: inbreeding, efektivna veličina populacije i heterozigotnost. Analiza je napravljena na 37 tradicionalnih nizozemskih pasmina. Za analizu su korišteni programski paketi SAS, R, PLINK, cgaTOH i SNeP. Heterozigotnost varira između pasmina. Od pasmine eikenburger kod koje iznosi 0.016±0.020, do pasmine sumatra 0.559±0.006. Najveće vrijednosti FROH imamo kod izvedenica iz velikih u patuljaste pasmine tzv. „neo-bantams“. Za preciznije izračune heterozigotnosti, FIS koeficijenta i efektivne veličine populacije potrebno je povećati veličinu uzorka za svaku populaciju na 20 jedinki. Procjena FROH zahtijeva prilagodbu zbog specifičnosti genoma kokoši.
Abstract (english)
Chickens and their products make up an important part of human nutrition and are also a suitable organism for research. There are many breeds of chickens that are widespread throughout the world. Today’s technology, high-density SNPs, and the availability of genomic information allow for easier and more accurate genome research. In this paper, the genetic parameters important for the assessment of population vulnerability were assessed, namely: inbreeding, effective population size and heterozygosity. The analysis was made on 37 traditional Dutch breeds. The software packages SAS, R, PLINK, cgaTOH and SNeP were used for the analysis. Heterozygosity varies between breeds. From the Eikenburger breed, which is 0.016 ± 0.020, to the Sumatra breed, it is 0.559 ± 0.006. We have the highest values of FROH in derivatives from large to dwarf breeds, the so-called "Neo-bantams". For more accurate calculations of heterozygosity, FIS coefficient, and effective population size, it is necessary to increase the sample size for each population to 20 individuals. The assessment of FROH requires adjustment due to the specificity of the chicken genome.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:204:884806
Study programmeTitle: Animal Genetics and Breeding
Study programme type: university
Study level: graduate
Academic / professional title: magistar/ magistra inženjer/inženjerka genetike i oplemenjivanja životinja (magistar/ magistra inženjer/inženjerka genetike i oplemenjivanja životinja)
Type of resourceText
File originBorn digital
Access conditionsAccess restricted to students and staff of home institution
Terms of useLicence In copyright icon
Created on2020-10-30 11:00:28