prikaz prve stranice dokumenta De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom
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master's thesis
De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom
Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. urn:nbn:hr:168:726447
Kostelac, Mario
University of Zagreb
Faculty of Electrical Engineering and Computing

Institutional repository: FER Repository

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Kostelac, M. (2016). De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom (Master's thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:726447

Kostelac, Mario. "De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:726447

Kostelac, Mario. "De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:726447

Kostelac, M. (2016). 'De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom', Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 24 December 2024, https://urn.nsk.hr/urn:nbn:hr:168:726447

Kostelac M. De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom [Master's thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2016 [cited 2024 December 24] Available at: https://urn.nsk.hr/urn:nbn:hr:168:726447

M. Kostelac, "De novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom", Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2016. Available at: https://urn.nsk.hr/urn:nbn:hr:168:726447

Metadata
TitleDe novo sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom
Title (english)De Novo Assembly Using Long Error-prone Reads
AuthorMario Kostelac
MentorMile Šikić (mentor)
Committee memberMile Šikić (predsjednik povjerenstva)
Committee memberDamir Seršić (član povjerenstva)
Committee memberMirjana Domazet-Lošo (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2016-02-15, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
Sastavljanje genoma koristeći dugačka očitanja s velikom pogreškom (bez ispravljanja očitanja) je obećavajuća metoda. Diplomski rad pokazuje da se, ako se koriste zajedno s jednostavnim metodama za uklanjanje šuma iz podataka, metode korištene za sastavljanje genoma koristeći kratka očitanja mogu koristiti i za sastavljanje genoma koristeći dugačka očitanja. Implementirane metode su testirane na dva skupa podataka E. coli (jedan tvrtke PacBio i jedan tvrtke Oxford Nanopore Technologies). Rezultati su uspoređeni s rezultatima miniasm assemblera.
Abstract (english)
Assembling genomes from long error-prone reads without error correction seems like a promising method. The thesis shows that layout methods used for assembling genomes from short reads can be utilized for assembling from long error-prone reads, if coupled with new methods for eliminating the noise from a dataset. Methods are validated with two datasets of Escherichia coli (PacBio and Oxford Nanopore Technologies). Results are compared with results of the miniasm assembler.
Keywords
Keywords (english)
Languageenglish
URN:NBNurn:nbn:hr:168:726447
Study programmeTitle: Computing
Study programme type: university
Study level: graduate
Academic / professional title: magistar/magistra inženjer/inženjerka računarstva (magistar/magistra inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
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Created on2018-02-06 09:47:20