prikaz prve stranice dokumenta Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma
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undergraduate thesis
Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma
Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. urn:nbn:hr:168:239692
Široki, Tin
University of Zagreb
Faculty of Electrical Engineering and Computing

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Široki, T. (2016). Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma (Undergraduate thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:239692

Široki, Tin. "Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:239692

Široki, Tin. "Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:239692

Široki, T. (2016). 'Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma', Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 27 November 2024, https://urn.nsk.hr/urn:nbn:hr:168:239692

Široki T. Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma [Undergraduate thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2016 [cited 2024 November 27] Available at: https://urn.nsk.hr/urn:nbn:hr:168:239692

T. Široki, "Određivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma", Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2016. Available at: https://urn.nsk.hr/urn:nbn:hr:168:239692

Metadata
TitleOdređivanje preklapanja među očitanjima u postupku de novo sastavljanja genoma
Title (english)Finding overlapping reads for de novo genome assembly
AuthorTin Široki
MentorMirjana Domazet-Lošo (mentor)
Committee memberMirjana Domazet-Lošo (predsjednik povjerenstva)
Committee memberMario Brčić (član povjerenstva)
Committee memberMarina Ptiček (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2016-07-11, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
Određivanje preklapanja je prvi korak de novo sastavljanja genoma metodom preklapanje-razmještaj-konsenzus . Za određivanje preklapanja koristio sam kombinirani pristup. Pristup koristi prošireno sufiksno polje za pronalazak identičnih preklapanja i dinamičko programiranje za poravnanje dijelova očitanja između identičnih preklapanja. Ovakav način određivanja preklapanja omogućava kompromis između kvalitete određenih preklapanja i vremena izvođenja.
Abstract (english)
Finding overlaps is the first step of de novo genome assembly using Overlap-Layout-Consensus method. To determine overlaps I used a combined approach. The approach uses enhanced suffix array for finding identical overlaps and dynamic programming to align parts of reads between identical overlaps. This method allows a trade off between the quality of determined overlaps and runtime.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:168:239692
Study programmeTitle: Computing
Study programme type: university
Study level: undergraduate
Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
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Created on2018-02-06 12:18:13