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master's thesis
Učinkovito sažimanje genoma korištenjem referentnog genoma
Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing, 2021. urn:nbn:hr:168:245331
Radanović, Juraj
University of Zagreb
Faculty of Electrical Engineering and Computing

Institutional repository: FER Repository

Cite this document

Radanović, J. (2021). Učinkovito sažimanje genoma korištenjem referentnog genoma (Master's thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:245331

Radanović, Juraj. "Učinkovito sažimanje genoma korištenjem referentnog genoma." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2021. https://urn.nsk.hr/urn:nbn:hr:168:245331

Radanović, Juraj. "Učinkovito sažimanje genoma korištenjem referentnog genoma." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2021. https://urn.nsk.hr/urn:nbn:hr:168:245331

Radanović, J. (2021). 'Učinkovito sažimanje genoma korištenjem referentnog genoma', Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 23 June 2024, https://urn.nsk.hr/urn:nbn:hr:168:245331

Radanović J. Učinkovito sažimanje genoma korištenjem referentnog genoma [Master's thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2021 [cited 2024 June 23] Available at: https://urn.nsk.hr/urn:nbn:hr:168:245331

J. Radanović, "Učinkovito sažimanje genoma korištenjem referentnog genoma", Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2021. Available at: https://urn.nsk.hr/urn:nbn:hr:168:245331

Metadata
TitleUčinkovito sažimanje genoma korištenjem referentnog genoma
Title (english)Efficient referential genome compression
AuthorJuraj Radanović
MentorMirjana Domazet-Lošo (mentor)
Committee memberMirjana Domazet-Lošo (predsjednik povjerenstva)
Committee memberKrešimir Fertalj (član povjerenstva)
Committee memberIvica Botički (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2021-07-06, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
U ovom radu sam implementirao SCCG algoritam za kompresiju genoma koristeći referentni genom. Referentni genom pomaže u boljoj kompresiji ciljnog genoma. Objašnjeni su glavni koncepti algoritma kao što su lokalno i globalno pretraživanje, hash mape, parametri algoritma. U radu su prikazani rezultati algoritma na nekoliko genoma te usporedbu s originalnom implementacijom i usporedbu lokalnog i globalnog pretraživanja. Također je prikazan utjecaj parametara na kompresiju kromosoma ljudskog genoma
Abstract (english)
In this thesis I implemented the SCCG algorithm for genome compression using a referential genome. The referential genome allows the target genome to achieve better compression. The core concepts of the algorithm are explained, such as local and global searching, hash maps, algorithm parameters. A sample of genomes were used to test the algorithm and compare it to the original, as well as a comparison between local and global searching. Also, different parameters were used to test the compression on a chromosome of a human genome.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:168:245331
Study programmeTitle: Computing
Study programme type: university
Study level: graduate
Academic / professional title: magistar/magistra inženjer/inženjerka računarstva (magistar/magistra inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
Access conditionsClosed access
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Created on2023-01-13 15:59:10