The institutional framework for supporting civil society in broader sense also implies a strategic and financial framework involving state administration bodies, government offices, public institutions and local self-government units. The institutional framework thus conceived has been recognized as an example of good practice in the region and in the world as a form of involving civil society in the creation of public policies and the provision of public service-oriented public services. Collaboration with public policy associations is most often manifested through various forms of co-operation and financial and non-financial support provided by public authorities to programs and projects of interest to the general good. Civil society organizations are one of the key actors in achieving the concept of good governance in co-operation with public bodies. As the main document that directs healthcare development in the present and forthcoming period, the National Health Development Strategy 2012-2020 is the basis for policy making and healthcare decisions, including decisions on budget allocation in the health sector. The most common form of cooperation with NGOs is through funding of NGO programs and projects, which make upgrading to the healthcare system in the part which it is unable to provide. This paper presents an analysis of financing of programs and projects of NGOs by all financial providers from public sources of previous years, analysis of researches on the implementation of NGO programs funded from state budget funds, their contribution to improving the quality of life of program beneficiaries and the impact of programs on realization measures and activities defined in the National Strategy for Health Care Development 2012-2020. and improving the quality of the health system.