prikaz prve stranice dokumenta Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)
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Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)
Croatica Chemica Acta, 85 (2012), 3; 327-351. https://doi.org/10.5562/cca1987
Glunčić, Matko; Rosandić, Marija; Jelovina, Denis; Dekanić, Krešimir; Vlahović, Ines; Paar, Vladimir

Institucijski repozitorij: Repozitorij Prirodoslovno-matematičkog fakulteta

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Glunčić, M., Rosandić, M., Jelovina, D., Dekanić, K., Vlahović, I. i Paar, V. (2012). Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly). Croatica Chemica Acta, 85. (3), 327-351. doi: 10.5562/cca1987

Glunčić, Matko, et al. "Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)." Croatica Chemica Acta, vol. 85, br. 3, 2012, str. 327-351. https://doi.org/10.5562/cca1987

Glunčić, Matko, Marija Rosandić, Denis Jelovina, Krešimir Dekanić, Ines Vlahović i Vladimir Paar. "Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)." Croatica Chemica Acta 85, br. 3 (2012): 327-351. https://doi.org/10.5562/cca1987

Glunčić, M., et al. (2012) 'Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)', Croatica Chemica Acta, 85(3), str. 327-351. doi: 10.5562/cca1987

Glunčić M, Rosandić M, Jelovina D, Dekanić K, Vlahović I, Paar V. Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly). Croatica Chemica Acta [Internet]. 2012. [pristupljeno 04.11.2024.];85(3):327-351. doi: 10.5562/cca1987

M. Glunčić, M. Rosandić, D. Jelovina, K. Dekanić, I. Vlahović i V. Paar, "Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)", Croatica Chemica Acta, vol. 85, br. 3, str. 327-351, 2012. [Online]. Dostupno na: https://urn.nsk.hr/urn:nbn:hr:217:217820. [Citirano: 04.11.2024.]

Za citiranje koristite ovu mrežnu adresu: https://urn.nsk.hr/urn:nbn:hr:217:217820
Podaci o radu
Naslov (engleski)Global Repeat Map Method for Higher Order Repeat Alpha Satellites in Human and Chimpanzee Genomes (Build 37.2 Assembly)
AutorMatko Glunčić
AutorMarija Rosandić
AutorDenis Jelovina
AutorKrešimir Dekanić
AutorInes Vlahović
AutorVladimir Paar
Autorova ustanovaSveučilište u Zagrebu
Prirodoslovno-matematički fakultet
(Fizički odsjek)
Znanstveno / umjetničko
područje, polje i grana		PRIRODNE ZNANOSTI
Fizika
Sažetak (engleski)
Alpha satellites are tandemly repeated sequences found in all human centromeres. In addition to the functional and structural role within centromere they are also a suitable model for evolutionary stud-ies, because of being subject to concerted evolution. The Global Repeat Map (GRM) algorithm is a convenient computational tool to determine consensus repeat units and their exact size within a given genomic sequence, both of monomeric and higher-order (HOR) type. Using GRM, we identify in Build 37.2 assembly fifteen different alpha satellite HORs, three of them novel, not reported previously. In the next step we compute suprachromosomal family classification and CENP-B box / pJ distributions for these HORs. All human alpha satellite sequences originate from one pra-ancestral alpha satellite monomer. For the first time we perform GRM analysis and compare human and chimpanzee alpha satellite HORs for chromosomes 4 and give an evidence that the human and chimpanzee alpha satellites originate from a common ancestor that predated the human-chimpanzee separation. We also compare the codon-like trinucleotide (CLT) extensions of human and chimpanzee chromosome 4. Our results are consistent with the expectation that the alpha satellite HORs in human and chimpanzee have been created after the human-chimpanzee separation.
Ključne riječi (engleski)
Jezikengleski
Vrsta publikacijeZnanstveni rad - Izvorni znanstveni rad
Status objaveObjavljen
Vrsta recenzijeRecenziran - međunarodna recenzija
Verzija publikacijeObjavljena verzija rada (izdavačev PDF)
Naslov časopisaCroatica Chemica Acta
Brojčani podacivol. 85, br. 3, str. 327-351
p-ISSN0011-1643
e-ISSN1334-417X
DOIhttps://doi.org/10.5562/cca1987
URN:NBNurn:nbn:hr:217:217820
Datum objave publikacije2012
ProjektŠifra: 119-0982464-1253
Naziv (hrvatski): KSA kompjutorsko istraživanje repeticija višeg reda i duplikona u humanom genomu
Voditelj: Vladimir Paar
Pravna nadležnost: Hrvatska
Financijer: MZOS
Linija financiranja: ZP
URL dokumentahttps://hrcak.srce.hr/92410
Vrsta resursaTekst
Prava pristupaOtvoreni pristup
Uvjeti korištenjaIkona licence Imenovanje 3.0 (CC BY 3.0)
Datum i vrijeme pohrane2019-11-15 18:30:20