The subject of research in this master's thesis is Modeling the transport process, with a particular emphasis on modeling the transport process within the Transport Company. The thesis is structured into four main chapters: Fundamentals of military logistics and the function of transportation logistics, Organization and structure of the Transport Company, Modeling and optimization, and Modeling of the transport process within the Transport Company. The first two chapters provide information on the history of logistics, with a focus on military logistics, and describe the operational methods, divisions, and organizational structure of military logistics. The third part of the thesis introduces the field of modeling and optimization, presenting basic concepts and procedures related to models, and emphasizing the importance of optimizing the transport proces. The final and most important chapter represents the thesis's core, where the Transport Company's selected routes are analyzed in more detail. This section explores alternative solutions based on factual evidence to optimize transportation routes. Finally, the thesis presents the ultimate solution for optimizing the transport process within the Transport Company. This master's thesis highlights the practical application of modeling the transport process within a military organization. The emphasis is placed on the implementation of research results to improve the efficiency of the Transport Company and achieve an optimal transport process.